species:   Scscl
pid:       PID1566
parent:    Ssc-milR-42
paralog:   
locus:     NW_001820814.1:403280-403358
matures:   ['UUGUAUAGAGCUUCGUGCUCAA', 'UAGCAUAAAGAUCUAUAUAGUCAG']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820814.1:403280-403358

1 out of bounds
11 alignments
10 proper strand
9 stranded perfect matches

         **************************          ************************          
CUGAAGGUCCAUAGCAUAAAGAUCUAUAUAGUCAGGACGAAUUUCCUUUGUAUAGAGCUUCGUGCUCAAGAUCAAUCAU
.(((.((((...(((((.(((.(((((((((..((((......))))))))))))).))).)))))...))))..))).
-----------------------------------------------UUGUAUAGAGCUUCGUGCUCAA---------- l=22 a=0 c
-----------UAGCAUAAAGAUCUAUAUAGUCAG-------------------------------------------- l=24 a=0 c*
----------------------------UAGUCAGGACGAAUUUCCUUU------------------------------ l=21 a=3 ma
-----------UAGCAUAAAGAUCUAUAUAGUCAG-------------------------------------------- l=24 a=0 ma*

------------------------UAUAUAGUCAGGACGAAUUUC---------------------------------- l=21 a=1 
------------------------UAUAUAGUCAGGACGAAUUUCC--------------------------------- l=22 a=2 
----------------------------UAGUCAGGACGAAUUUCCUUU------------------------------ l=21 a=3 (ma)
----------------------------UAGUCAGGACGAAUUUCCUUUa----------------------------- l=22 a=1 
----------------------------UAGUCAGGACGAAUUUCCUUUG----------------------------- l=22 a=3 

mb-00010
ax-1011011
ku-01
ss-111111101110
fn-111
